The n-cutting sites in y-g splicing system and their de bruijn graph presentations / (Record no. 102537)

MARC details
000 -LEADER
fixed length control field 03852ntm a2200337 i 4500
003 - CONTROL NUMBER IDENTIFIER
control field MY-KuUP
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20251125111040.0
006 - FIXED-LENGTH DATA ELEMENTS--ADDITIONAL MATERIAL CHARACTERISTICS
fixed length control field t||||fr|||| 000 0
007 - PHYSICAL DESCRIPTION FIXED FIELD--GENERAL INFORMATION
fixed length control field ta
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 250515t20252025my a|||fr|||| 000 0 eng d
020 ## - INTERNATIONAL STANDARD BOOK NUMBER
International Standard Book Number THE0010071 (Local)
Qualifying information Hardback
040 ## - CATALOGING SOURCE
Original cataloging agency UMPSA
Language of cataloging eng
Transcribing agency UMPSA
Description conventions rda
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) PSM .A34 2025 r Thesis
100 0# - MAIN ENTRY--PERSONAL NAME
Personal name Nooradelena Mohd Ruslim,
Relator term author.
245 10 - TITLE STATEMENT
Title The n-cutting sites in y-g splicing system and their de bruijn graph presentations /
Statement of responsibility, etc. Nooradelena Binti Mohd Ruslim
264 #1 - PRODUCTION, PUBLICATION, DISTRIBUTION, MANUFACTURE, AND COPYRIGHT NOTICE
Place of production, publication, distribution, manufacture Kuantan Pahang :
Name of producer, publisher, distributor, manufacturer UMPSA,
Date of production, publication, distribution, manufacture, or copyright notice 2025
264 #4 - PRODUCTION, PUBLICATION, DISTRIBUTION, MANUFACTURE, AND COPYRIGHT NOTICE
Date of production, publication, distribution, manufacture, or copyright notice © 2025
300 ## - PHYSICAL DESCRIPTION
Extent xvii, 110 pages :
Other physical details Illustrations (some colour) ;
Dimensions 30 cm.+
Accompanying material 1 CD-ROM
336 ## - CONTENT TYPE
Source rdacontent
Content type term text
337 ## - MEDIA TYPE
Source rdamedia
Media type term unmediated
338 ## - CARRIER TYPE
Source rdacarrier
Carrier type term volume
347 ## - DIGITAL FILE CHARACTERISTICS
Source rda
File type text file
Encoding format PDF
500 ## - GENERAL NOTE
General note Center for Mathematical Sciences
502 ## - DISSERTATION NOTE
Dissertation note Thesis (Doctor of Philosophy) -- Universiti Malaysia Pahang – 2025
504 ## - BIBLIOGRAPHY, ETC. NOTE
Bibliography, etc. note Includes bibliographical reference
520 3# - SUMMARY, ETC.
Summary, etc. Yusof-Goode splicing system is a new symbolisation writing rule that shows the cutting process in a translucent way. This system is an extension of the pioneer Head splicing system under the framework of Formal Language Theory. In reality, conducting an experiment involving deoxyribonucleic acid (DNA) to obtain a specific restricted output can take a considerable amount of time, especially when it involves numerous dangling DNA sequences. In order to minimise the need to conduct repeated experimental trials, this research aims to explore how n-cutting sites, enzyme properties, and context features affect the DNA sequence formation. Mathematically, the generated DNA sequence of the experiment known as splicing language can be categorised as the inert, transient, limit, or active persistent language. Previous studies focused on splicing systems with one or two cutting sites. However, the impact of incorporating n-cutting sites on the generation and classification of splicing languages remains unexplored. Furthermore, the properties of palindromic and non-palindromic restriction enzymes, along with the influence of their left and right contexts on splicing languages have not been fully investigated. Additionally, current methodologies lack an effective framework for visualising and classifying splicing languages generated through splicing process. Though de Bruijn graphs have potential in this context, their application in representing and analysing splicing systems with n-cutting sites has not been adequately studied. This research addresses these gaps by investigating the effects of n-cutting sites in splicing systems using the Yusof-Goode approach, incorporating rule properties, left and right contexts effects, and leveraging de Bruijn graphs for classification and visualisation. These are shown through corollaries, lemmas and theorems which proposed via Formal Language Theory and proven via various methods, including mathematical induction and double induction. The lemmas and theorems proved that the splicing language generated from Y-G splicing system containing a string with n-cutting sites can be generalised and the results are applicable for simple and null-context splicing systems. Besides, the de Bruijn graph is employed to present the generated languages and demonstrate its efficacy in identifying the splicing languages. According to the observations, three types of splicing languages can be identified based on the path between vertices developed in the graph. Lastly, the presented lemmas and theorems are verified by using three established laboratory experimental results.
610 20 - SUBJECT ADDED ENTRY--CORPORATE NAME
Corporate name or jurisdiction name as entry element Center for Mathematical Sciences
General subdivision Dissertations
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element Universities and colleges
General subdivision Dissertations
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element Theses
General subdivision Dissertations
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Source of classification or shelving scheme Library of Congress Classification
Koha item type Thesis
Holdings
Withdrawn status Lost status Source of classification or shelving scheme Damaged status Not for loan Home library Current library Date acquired Total checkouts Full call number Barcode Date last seen Price effective from Koha item type
  Not lost Library of Congress Classification   Not for loan UMPLIB GAMBANG UMPLIB GAMBANG 15/05/2025   PSM .A34 2025 r Thesis T000003512 15/05/2025 15/05/2025 Thesis
  Not lost Library of Congress Classification     UMPLIB GAMBANG UMPLIB GAMBANG 15/05/2025   CD13740 T000003513 15/05/2025 15/05/2025 Thesis

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