Identification of unique DNA sequences in Aquilaria malaccensis and Aquilaria hirta via genomic representational difference anaylsis (RDA)/ (Record no. 6556)

MARC details
000 -LEADER
fixed length control field 03751ntm a2200289 a 4500
001 - CONTROL NUMBER
control field vtls000094233
003 - CONTROL NUMBER IDENTIFIER
control field KUKTEM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20251117113318.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 160404t2015 da f ab m 000 0 eng d
020 ## - INTERNATIONAL STANDARD BOOK NUMBER
International Standard Book Number THE0000181(Local)
039 #9 - LEVEL OF BIBLIOGRAPHIC CONTROL AND CODING DETAIL [OBSOLETE]
Level of rules in bibliographic description 201905131652
Level of effort used to assign nonsubject heading access points nazirah
Level of effort used to assign subject headings 201710120954
Level of effort used to assign classification aishah
Level of effort used to assign subject headings 201604041109
Level of effort used to assign classification shima
-- 201604041029
-- shima
040 ## - CATALOGING SOURCE
Original cataloging agency UMP
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) FIST .N66 2014 r Thesis
100 0# - MAIN ENTRY--PERSONAL NAME
Personal name Noorhidayah Md Nazir
245 1# - TITLE STATEMENT
Title Identification of unique DNA sequences in Aquilaria malaccensis and Aquilaria hirta via genomic representational difference anaylsis (RDA)/
Statement of responsibility, etc. Noorhidayah Md Nazir
260 ## - PUBLICATION, DISTRIBUTION, ETC.
Place of publication, distribution, etc. Kuantan, Pahang :
Name of publisher, distributor, etc. UMP,
Date of publication, distribution, etc. 2014
300 ## - PHYSICAL DESCRIPTION
Extent xv, 116 p. :
Other physical details ill. (some col.) ;
Dimensions 30 cm. +
Accompanying material 1 CD-ROM
500 ## - GENERAL NOTE
General note Faculty of Industrial Science and Technology
502 ## - DISSERTATION NOTE
Dissertation note Thesis (Master of Science (Biotechnology))-- Universiti Malaysia Pahang – 2014
504 ## - BIBLIOGRAPHY, ETC. NOTE
Bibliography, etc. note Bibliography : p. 92-102
520 3# - SUMMARY, ETC.
Summary, etc. Aquilaria species that are listed among the endangered plant species are well known as the main agarwood producers in the world. Agarwood produced by Aquilaria spp. has been widely used in traditional medicine, incenses for religious rituals and also in perfumery industry. However, identification of the species in Aquilaria genus is very challenging due the changing of their morphological structures that are highly dependent on the changes of environmental conditions. Thus, this study was aimed to identify the unique DNA sequences that are available in the genome of Aquilaria malaccensis and A. hirta to be used as specific molecular markers for species identification purpose. Genomic Representational Difference Analysis (RDA) was applied by amplifying DNA sequences that are only available in the genome of interest species while eliminating DNA sequences that are redundant in both interest and noninterest genomes. A number of three rounds of RDA with different ratios of “tester” and “driver” DNA were carried out and finally, 15 unique DNA sequences were successfully isolated from the final round of RDA. The isolated sequences were sequenced and subjected to BLASTN analysis for identification and prediction of their functional role based on their similarity to homologous DNA sequences that are available in the NCBI GenBank database. From the BLASTN analysis, majority of the sequences did not match to any sequence that is available in the database. This might be due to the lacking of information discovered and reported on Aquilaria spp. in molecular biology as well as bioinformatics aspects. Based on the isolated sequences, different set of gene specific primers were designed specifically for each potential sequence. The primers were subsequently applied in PCR amplification of the unique DNA sequences directly from genomic DNA of selected Aquilaria spp. for confirmation of the presence of the DNA sequences uniquely in species of interest while absence in the other Aquilaria spp.. From the confirmation, 12 unique DNA sequences have shown their potential to be used as molecular markers in A. hirta while in A.malaccensis, there are only three identified potential sequences to be used as molecular markers. The isolated unique DNA sequences will be very useful for Aquilaria spp. identification that will benefit agarwood plantation industry in order to produce and maintain a good quality of agarwood for fragrance and perfumery industries.
610 20 - SUBJECT ADDED ENTRY--CORPORATE NAME
Corporate name or jurisdiction name as entry element Faculty of Industrial Science and Technology
General subdivision Dissertations
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element Universities and Colleges
General subdivision Dissertations
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name entry element Theses
856 40 - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier <a href="http://ecollib.ump.edu.my/3665/">http://ecollib.ump.edu.my/3665/</a>
Public note Library access only
Holdings
Withdrawn status Lost status Source of classification or shelving scheme Damaged status Not for loan Home library Current library Date acquired Total checkouts Full call number Barcode Date last seen Copy number Price effective from Koha item type
  Not lost Library of Congress Classification   Not for loan UMPLIB GAMBANG UMPLIB GAMBANG 04/09/2019   FIST .N66 2014 r Thesis 0000107707 04/09/2019 1 04/09/2019 Thesis
  Not lost Library of Congress Classification   Not for loan UMPLIB GAMBANG UMPLIB GAMBANG 04/09/2019   CD 9614 | FIST .N66 2014 r Thesis 0000107708 04/09/2019 1 04/09/2019 Thesis

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