The community efforts to harness biological complexity Stolovitzky, Gustavo. Kahlem, Pascal. Califano, Andrea. DREAM2 Conference (2007 : New York, N.Y.) ENFIN-DREAM Conference (2008 : Madrid, Spain) text bibliography mau Boston, Mass Published by Blackwell Pub. on behalf of the New York Academy of Sciences c2009 2009 monographic eng

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xii, 316 p. : ill. (some col.) ; 25 cm. Ranking genes by their co-expression to subsets of pathway members / Priit Adler ... [et al.] -- Creating reference datasets for systems biology applications using text mining / Martin Krallinger, Ana María Rojas, Alfonso Valencia -- The condition-dependent transcriptional network in Escherichia coli / Karen Lemmens ... [et al.] -- Reverse-engineering transcriptional modules from gene expression data / Tom Michoel ... [et al.] -- Specification of spatial relationships in directed graphs of cell signaling networks / Azi Lipshtat, Susana R. Neves, Ravi Iyengar -- Uncovering metabolic objectives pursued by changes of enzyme levels / Sabrina Hoffmann, Hermann-Georg Holzhütter -- Modeling of gene regulatory network dynamics using threshold logic / Tejaswi Gowda, Sarma Vrudhula, Seungchan Kim -- Global robustness and identifiability of random, scale-free, and small-world networks / Yunchen Gong, Zhaolei Zhang -- The five-gene-network data analysis with local causal discovery algorithm using causal Bayesian networks / Changwon Yoo, Erik M. Brilz -- Combining multiple results of a reverse-engineering algorithm: application to the DREAM five-gene network challenge / Daniel Marbach, Claudio Mattiussi, Dario Floreano -- Network inference by combining biologically motivated regulatory constraints with penalized regression / Fabio Parisi, Heinz Koeppl, Felix Naef -- A gene network simulator to assess reverse engineering algorithms / Barbara Di Camillo, Gianna Toffolo, Claudio Cobelli -- A network inference workflow applied to virulence-related processes in Salmonella typhimurium / Ronald C. Taylor ... [et al.] -- Lessons from the DREAM2 challenges : a community effort to assess biological network inference / Gustavo Stolovitzky, Robert J. Prill, Andrea Califano -- DREAM2 challenge : integrated multi-array supervised learning algorithm for BCL6 transcriptional targets prediction / W.H. Lee ... [et al.] -- A data integration framework for prediction of transcription factor targets : a BCL6 case study / Matti Nykter ... [et al.] -- Inferring direct regulatory targets of a transcription factor in the DREAM2 challenge / Vinsensius B. Vega ... [et al.] -- A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge / Hon Nian Chua ... [et al.] -- Replaying the evolutionary tape : biomimetic reverse engineering of gene networks / Daniel Marbach, Claudio Mattiussi, Dario Floreano -- Inferring gene networks : dream or nightmare? : part 1: challenges 1 and 3 / Angela Baralla, Wieslawa I. Mentzen, Alberto de la Fuente -- NIRest : a tool for gene network and mode of action inference / Mario Lauria, Francesco Iorio, Diego di Bernardo -- Reverse engineering of gene networks with LASSO and nonlinear basis functions / Mika Gustafsson ... [et al.] -- Prediction of pairwise gene interaction using threshold logic / Tejaswi Gowda, Sarma Vrudhula, Seungchan Kim -- Inferring gene networks : dream or nightmare? : part 2: challenges 4 and 5 / Alan Scheinine ... [et al.] -- Inference of regulatory gene interactions from expression data using three-way mutual information / John Watkinson ... [et al.] specialized edited by Gustavo Stolovitzky, Pascal Kahlem, and Andrea Califano "The volume is the result of the Second Dialogue on Reverse Engineering Assessment and Methods (DREAM2) Challenges, posed to the systems biology community between July and October, 2007; the DREAM2 Conference, held on December 3-4, 2007 at the New York Academy of Sciences in New York; and the ENFIN-DREAM Conference, Assessment of Computational Methods in Systems Biology, held on April 28-29, 2008 in Madrid, Spain"--P. v Includes bibliographical references and index Issued also online Systems biology Congresses Systems Biology Congresses Gene Regulatory Networks Congresses 9781573317511 1573317519 http://www.loc.gov/catdir/enhancements/fy1003/2009368271-d.html http://www.loc.gov/catdir/enhancements/fy1003/2009368271-d.html UMP 090903 20251117144454.0 vtls000043178